Additions:
~-MIARE checklist and Tab file v0.8.1 - June 2011
- MIARE-Tab v0.8.1 - a simple spreadsheet-based data exchange format Excel∞
Deletions:
~-MIARE checklist and Tab file v0.8.0 - May 2011
Edited on 2011-05-26 10:14:33 by MiareAdmin
Additions:
~General MIARE discussion
- an open list to facilitate discussion by end users about MIARE and any aspect of its ongoing development.
Deletions:
~General MIARE discussion: an open list to facilitate discussion by end users about MIARE and any aspect of its ongoing development.
Edited on 2011-05-26 10:12:15 by MiareAdmin
Additions:
~General MIARE announcements
Deletions:
~General MIARE announcements: announcements about new releases and updates to MIARE. Anyone can join this list to receive postings, but only MIARE developers and coordinators may post to it.
Edited on 2011-05-26 10:11:19 by MiareAdmin
Additions:
~General MIARE discussion: an open list to facilitate discussion by end users about MIARE and any aspect of its ongoing development.
Deletions:
~General MIARE discussion
Edited on 2011-05-26 09:59:03 by MiareAdmin
Additions:
~General MIARE announcements: announcements about new releases and updates to MIARE. Anyone can join this list to receive postings, but only MIARE developers and coordinators may post to it.
Deletions:
~General MIARE announcements
Edited on 2011-05-26 09:49:06 by MiareAdmin
Additions:
~You can browse the list archive∞ or subscribe/unsubscribe∞
Deletions:
~You can mail miare-announce@lists.sourceforge.net∞, browse the list archive∞ or subscribe/unsubscribe∞
Edited on 2011-05-26 09:47:36 by MiareAdmin
Additions:
~You can mail miare-discuss@lists.sourceforge.net∞, browse the list archive∞ or subscribe/unsubscribe∞
Deletions:
~You can mail miare-discussl@lists.sourceforge.net∞, browse the list archive∞ or subscribe/unsubscribe∞
Edited on 2011-05-16 18:49:38 by MiareAdmin
Additions:
~-MIARE checklist and Tab file v0.8.0 - May 2011
Deletions:
~-MIARE checklist and Tab file v0.7.7 - January 2011
Edited on 2011-05-16 18:47:52 by MiareAdmin
No differences.
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Deletions:
~-Deposition template v0.1.0∞ - deposit MIARE-compliant RNAi screening data into PubChem
Edited on 2011-05-16 18:43:53 by MiareAdmin
Additions:
~-MIARE-Tab guidance notes v0.8.0 HTML | PDF∞
Edited on 2011-05-16 18:36:38 by MiareAdmin
Additions:
~-MIARE reporting checklist v0.8.0 HTML | PDF∞
Deletions:
~-MIARE reporting checklist v0.8.0 HTML | PDF∞
Edited on 2011-05-16 18:34:47 by MiareAdmin
Additions:
~-MIARE reporting checklist v0.8.0 HTML | PDF∞
Deletions:
~-MIARE reporting checklist v0.8.0 HTML | PDF∞
Edited on 2011-05-16 16:51:37 by MiareAdmin
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~-MIARE reporting checklist v0.8.0 HTML | PDF∞
Deletions:
~-MIARE reporting checklist v0.7.7 HTML | PDF∞
Edited on 2011-05-16 16:50:11 by MiareAdmin
Additions:
~-miare-discuss
General MIARE discussion
You can mail miare-discussl@lists.sourceforge.net∞, browse the list archive∞ or subscribe/unsubscribe∞
Deletions:
~-miare-objectmodel
Discussion list for MIARE object model
You can mail miare-objectmodel@lists.sourceforge.net∞, browse the list archive∞ or subscribe/unsubscribe∞
Oldest known version of this page was edited on 2011-05-13 10:13:17 by MiareAdmin []
Page view:
Introduction
Minimum Information About an RNAi Experiment (MIARE) is a set of reporting guidelines that describes the minimum information that should be reported about an RNAi experiment to enable the unambiguous interpretation and reproduction of the results. MIARE forms part of a larger effort to develop RNAi data standards that include a data model, data exchange format, controlled vocabulary and supporting software tools.
The MIARE reporting guidelines were initiated by members of the RNAi Global∞ Informatics Work Group in order to facilitate data sharing within the initiative. The guidelines were developed in part by an inter-laboratory benchmarking study to identify minimal reporting parameters for high-throughput siRNA screens, and in part by workshops and discussions within RNAi Global. The development of the MIARE standard is a collaborative effort driven by members of the RNAi community. We strongly encourage feedback on the draft reporting guidelines and the MIARE-Tab data exchange file. The aim is to develop these documents by consensus, so they can readily meet the needs of experimentalists who wish to share their high-throughput RNAi data in a standardised format, that allows meaningful comparisons across disparate datasets.
News
- MIARE checklist and Tab file v0.7.7 - January 2011
- PubChem RNAi deposition template for the submission of MIARE-compliant RNAi screening data to PubChem - October 2010
- The developers of MIARE and PubChem∞ formulate a roadmap to incorporate the MIARE data-exchange specification into the PubChem BioAssay deposition process during a workshop∞ hosted at the Division of Pathway Medicine∞ - June 2010
- Zhang EE et al at the Genomics Institute of the Novartis Research Foundation deposit screening data from A genome-wide RNAi screen for modifiers of the circadian clock in human cells∞ into PubChem BioAssay∞ - September 2009
- Dharmacon,∞ in collaboration with NCBI,∞ upload a 'pilot' RNAi screening data set∞ into PubChem BioAssay, successfully demonstrating the incorporation of MIARE-compliant data into PubChem∞ - March 2009
- MIARE talk by Dr. Anastasia Khvorova∞ at Keystone Symposia∞
- MIARE registered with MIBBI∞
- MIARE mentioned in Nature Biotechnology editorial Standard Operating Procedures Nat Biotechnol. 2006 Nov;24(11):1299∞
- Chi's Discovery on Target Meeting∞ (October 23-26, 2006)
- MIARE mentioned in publication: Standards for Systems Biology Nat Rev Genet. 2006 Aug;7(8):593-605∞
- RNAi Global Initiative members meet to establish collaboration, and accelerate biomedical discovery using genome-wide siRNA library∞
Minimal Information About An RNAi Experiment (MIARE) – Proposed Reporting Guidelines
Current Documents
- MIARE reporting checklist v0.7.7 HTML | PDF∞
- MIARE-Tab v0.7.7 - a simple spreadsheet-based data exchange format Excel∞
- Examples of completed MIARE-Tab files
- Previous versions of documents
PubChem Deposition Gateway
- PubChem Deposition Gateway∞
- Deposition template v0.1.0∞ - deposit MIARE-compliant RNAi screening data into PubChem
Mailing Lists
- miare-announce
General MIARE announcements
You can mail miare-announce@lists.sourceforge.net∞, browse the list archive∞ or subscribe/unsubscribe∞
- miare-objectmodel
Discussion list for MIARE object model
You can mail miare-objectmodel@lists.sourceforge.net∞, browse the list archive∞ or subscribe/unsubscribe∞
Forums
Links
- Minimum Information Resources
- MIBBI, Minimum Information for Biological and Biomedical Investigations (MI Checklist Portal)
- MIAME, gene expression microarray
- MIAME-env, environmental genomics
- MIAME-nut, nutrional genomics
- MIAME-tox, toxogenomics
- MIAME-Plant
- MIAPE, proteomic experiments
- MIAPE CC, reporting requirements for column chromatography
- MIAPE CE, reporting requirements for capillary electrophoresis
- MIAPE-MS, mass spectrometry
- MIAPE SP, reporting requirements for sample preparation and handling
- MIAPE-GE, gel electrophoresis
- MIAPE GI, reporting requirements for gel informatics
- MIMIX, Molecular Interaction experiment
- MIACA, cell based assay
- MIGS, genome sequence
- MIFACE, flow cytometry
- MISFISHIE, In Situ Hybridization and Immunohistochemistry Experiments
- MIAPA, Phylogenetic Analysis
- MIAO, ORF
- MIAMET, METabolomics experiment
- MIAFGE, Functional Genomics Experiment
- MIRIAM, Minimum information requested in the annotation of biochemical models
- Data Standards
- Omics A Journal of Integrative Biology, A Special Issue on Data Standards
- RNA Interference
- RNAi Global, The RNAi Global Initiative
- NCBI Gene Silencing Resource, NCBI database of RNAi reagents and experimental results generated using those reagents
- The RNAi Web, web resource for RNAi
- Databases
- PubChem, an NCBI database storing information from screens on the biological activities of small molecules and other reagents
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