MIARE: Minimum Information About an RNAi Experiment : SilencingRNAReagentType

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Controlled vocabulary for Silencing RNA Reagent Type.
Parent Term Preferred Term Definition Definition Source Alternative Term AlternativeTermSource
Silencing RNA Reagent Type siRNA Small RNAs of 21–23 nucleotides in length that engage the complementary mRNA into the RISC complex for degradation PMID: 16607417 small interfering RNA
Silencing RNA Reagent Type shRNA Small dsRNA constructs that are usually 22–29 nucleotides long and form a hairpin-like secondary structure PMID: 16607418 short hairpin RNA
siRNA esiRNA Mixture of siRNA oligos resulting from cleavage of long double-stranded RNA (dsRNA) with Escherichia coli RNase III http://www.ncbi.nlm.nih.gov/projects/genome/probe/doc/Glossary.shtml/ Endoribonuclease-prepared siRNAs
Silencing RNA Reagent Type stRNA stRNAs exert negative post-transcriptional regulation by binding to complementary sequences in the 3' untranslated regions of their target genes. stRNAs are transcribed as longer precursor RNAs that are processed by the RNase Dicer/DCR-1 and members of the RDE-1/AGO1 family of proteins. http://www.ncbi.nlm.nih.gov/projects/genome/probe/doc/Glossary.shtml Small temporal RNA

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